Udemy - Reading Structural Variants in IGV (short-read NGS)
File List
| File | Size |
|---|---|
| Get Bonus Downloads Here.url | 180 B |
| ~Get Your Files Here !/1 - Introduction to the course/1. Why this course matters.html | 8.44 KB |
| ~Get Your Files Here !/1 - Introduction to the course/2. Download IGV.url | 65 B |
| ~Get Your Files Here !/1 - Introduction to the course/2. File formats for IGV.url | 106 B |
| ~Get Your Files Here !/1 - Introduction to the course/2. Integrated genomics viewer (IGV) as a tool for CNV visualization (Description).html | 826 B |
| ~Get Your Files Here !/1 - Introduction to the course/2. Integrated genomics viewer (IGV) as a tool for CNV visualization.html | 8.18 KB |
| ~Get Your Files Here !/2 - Understanding paired-end reads and CNVs/1. Section 2_Quiz.html | 19 KB |
| ~Get Your Files Here !/2 - Understanding paired-end reads and CNVs/3. Structure of paired-end reads (Description).html | 723 B |
| ~Get Your Files Here !/2 - Understanding paired-end reads and CNVs/3. Structure of paired-end reads.html | 9.98 KB |
| ~Get Your Files Here !/2 - Understanding paired-end reads and CNVs/4. What are structural variants (Description).html | 762 B |
| ~Get Your Files Here !/2 - Understanding paired-end reads and CNVs/4. What are structural variants.html | 8.09 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/10. IGV Checklist for Visualizing Deletions.pdf | 85.11 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/10. Visualizing deletions in IGV.html | 11.49 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/11. Deletions in IGV Practical Examples (Video tutorial) (Description).html | 978 B |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/11. Deletions in IGV Practical Examples (Video tutorial).mp4 | 79.58 MB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/12. Interpretation and clinical significance of deletions.html | 9.39 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/12. Results of Chromosomal Microarray Need to Always Be Checked by (Molecular) Cytogenetics—Even If They Seem to Be Simple Deletions.pdf | 644.71 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/12. Technical Standards for the Interpretation and Reporting of Constitutional Copy Number Variants_A Joint Consensus Recommendation of the American College of .. | 478.49 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/12. uk-practice-guidelines-for-variant-classification-v12-2024.pdf | 1.82 MB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/13. Key Features of Deletions and Tandem Duplications in IGV.pdf | 301.39 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/13. Visualizing tandem duplication in IGV.html | 13.16 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/14. Tandem duplication in IGV Practical Examples (Video tutorial) (Description).html | 886 B |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/14. Tandem duplication in IGV Practical Examples (Video tutorial).mp4 | 58.08 MB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/15. Challenges in interpreting duplications.html | 14.75 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/15. Scott Newman et al, 2015.pdf | 1.72 MB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/16. Checklist for duplication visualization in IGV.pdf | 145.01 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/16. Interspersed duplications in IGV.html | 8.63 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/2. Section 3_Quiz 1.html | 21.02 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/3. Section 3_Quiz 2.html | 24.05 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/5. Unbalanced structural variants in short-read data.html | 8.24 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/6. Read depth as evidence for CNVs.html | 7.11 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/7. Allele balance and Loss of Heterozygosity (LOH).html | 7.71 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/8. Discordant read pairs orientation and insert size.html | 7.42 KB |
| ~Get Your Files Here !/3 - Detecting structural variants in short-read data - unbalanced SV/9. Split and soft-clipped reads finding breakpoints.html | 8.47 KB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/17. Balanced structural variants.html | 7.64 KB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/18. Visualizing insertions in IGV.html | 11.67 KB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/19. Visualizing inversion in IGV.html | 17.82 KB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/20. Inversion in IGV Practical Examples (Video tutorial).mp4 | 63.05 MB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/21. Biological consequences of inversions.html | 9.48 KB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/22. Visualizing translocation in IGV.html | 11.75 KB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/23. Mobile retrocopies in short-read NGS a common interpretation pitfall (Description).html | 1022 B |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/23. Mobile retrocopies in short-read NGS a common interpretation pitfall.html | 11.6 KB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/24. Thank you and final words.mp4 | 37.79 MB |
| ~Get Your Files Here !/4 - Detecting structural variants in short-read data - balanced SV/4. Section 4_Quiz.html | 20.46 KB |
| ~Get Your Files Here !/Bonus Resources.txt | 70 B |
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